fathom(1)
sequence and annotation tool
SYNOPSIS
fathom
<ann> <dna> <commands>
OPTIONS
- -help
-
report useful information
-
-validate [-quiet]
-
-gene-stats [-errors-ok -nucleotide -dinucleotide]
-
-categorize <int>
-
-export <int> [-plus -errors-ok]
-
-extract <feature> -length <int> -offset <int>
-
-exon-intron
-
-split <-number <int> | -training <float> | -GC <float> | -repeat <float>>
-
-ace-format <-gene-method <string> [-dna -extra <string>]>
-
-compare-genes <predictions> [-details]
-
-score-genes <hmm> [-errors-ok]
-
-filter-genes <hmm> -min-score <float> -min-length <int>
