fdnapenny(1) Penny algorithm for DNA


fdnapenny -sequence seqsetall [-weights properties] [-howoften integer] [-howmany integer] [-simple boolean] [-outgrno integer] [-thresh toggle] -threshold float -outfile outfile [-trout toggle] -outtreefile outfile [-printdata boolean] [-progress boolean] [-treeprint boolean] [-stepbox boolean] [-ancseq boolean]
fdnapenny -help



is a command line program from EMBOSS ("the European Molecular Biology Open Software Suite"). It is part of the "Phylogeny:Molecular sequence" command group(s).


Input section

-sequence seqsetall

File containing one or more sequence alignments

-weights properties

Additional section

-howoften integer

Default value: 100

-howmany integer

Default value: 1000

-simple boolean

Default value: Y

-outgrno integer

-thresh toggle

Default value: N

-threshold float

Default value: 1.0

Output section

-outfile outfile

-trout toggle

Default value: Y

-outtreefile outfile

-printdata boolean

Default value: N

-progress boolean

Default value: Y

-treeprint boolean

Default value: Y

-stepbox boolean

Default value: N

-ancseq boolean

Default value: N


Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).


Debian Med Packaging Team <[email protected]>

Wrote the script used to autogenerate this manual page.


This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.