man fdolpenny (1): Penny algorithm Dollo or polymorphism

SYNOPSIS

fdolpenny -infile discretestates [-weights properties] [-ancfile properties] [-thresh toggle] -threshold float [-howmany integer] [-howoften integer] [-simple boolean] [-method list] -outfile outfile [-trout toggle] -outtreefile outfile [-printdata boolean] [-progress boolean] [-treeprint boolean] [-ancseq boolean] [-stepbox boolean]
fdolpenny -help

DESCRIPTION

fdolpenny

is a command line program from EMBOSS ("the European Molecular Biology Open Software Suite"). It is part of the "Phylogeny:Discrete characters" command group(s).

OPTIONS

Input section

-infile discretestates

: File containing one or more data sets

-weights properties

-ancfile properties

Additional section

-thresh toggle

: Default value: N

-threshold float

: Default value: 1

-howmany integer

: Default value: 1000

-howoften integer

: Default value: 100

-simple boolean

: Default value: Y

-method list

: Default value: d

Output section

-outfile outfile

-trout toggle

: Default value: Y

-outtreefile outfile

-printdata boolean

: Default value: N

-progress boolean

: Default value: Y

-treeprint boolean

: Default value: Y

-ancseq boolean

: Default value: N

-stepbox boolean

: Default value: N

BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

AUTHOR

Debian Med Packaging Team <[email protected]>

: Wrote the script used to autogenerate this manual page.

COPYRIGHT

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.