man ffitch (1): Fitch-Margoliash and Least-Squares Distance Methods

SYNOPSIS

ffitch -datafile distances -intreefile tree [-matrixtype list] [-minev boolean] -njumble integer -seed integer [-outgrno integer] [-power float] -lengths boolean -negallowed boolean -global boolean [-replicates boolean] -outfile outfile [-trout toggle] -outtreefile outfile [-printdata boolean] [-progress boolean] [-treeprint boolean]
ffitch -help

DESCRIPTION

ffitch

is a command line program from EMBOSS ("the European Molecular Biology Open Software Suite"). It is part of the "Phylogeny:Distance matrix" command group(s).

OPTIONS

Input section

-datafile distances

: File containing one or more distance matrices

-intreefile tree

Additional section

-matrixtype list

: Default value: s

-minev boolean

: Default value: N

-njumble integer

-seed integer

: Default value: 1

-outgrno integer

-power float

: Default value: 2.0

-lengths boolean

: Default value: N

-negallowed boolean

: Default value: N

-global boolean

: Default value: N

-replicates boolean

: Default value: N

Output section

-outfile outfile

-trout toggle

: Default value: Y

-outtreefile outfile

-printdata boolean

: Default value: N

-progress boolean

: Default value: Y

-treeprint boolean

: Default value: Y

BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

AUTHOR

Debian Med Packaging Team <[email protected]>

: Wrote the script used to autogenerate this manual page.

COPYRIGHT

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.