fit_spline_dfield(1)
Deformation Field to Transformation
SYNOPSIS
fit_spline_dfield InputDField OutputXform
DESCRIPTION
Fit a parametric nonrigid transformation (B-spline free-form deformation) to a deformation field
OPTIONS
Global Toolkit Options (these are shared by all CMTK tools)
- --help
-
Write list of basic command line options to standard output.
- --help-all
-
Write complete list of basic and advanced command line options to standard output.
- --wiki
-
Write list of command line options to standard output in MediaWiki markup.
- --man
-
Write man page source in 'nroff' markup to standard output.
- --version
-
Write toolkit version to standard output.
- --echo
-
Write the current command line to standard output.
- --verbose-level <integer>
-
Set verbosity level.
- --verbose, -v
-
Increment verbosity level by 1 (deprecated; supported for backward compatibility).
- --threads <integer>
-
Set maximum number of parallel threads (for POSIX threads and OpenMP).
Input Options
- --absolute
-
Input is an absolute transformation field [x maps to input(x)]
[This is the default]
- --relative
-
Input is relative deformation field, e.g., a gradient or force field [x maps to x+input(x)]
Fitting Options
- --levels <integer>
-
Number of levels in the multi-level B-spline approximation procedure.
[Default: 1]
- --fit-affine-first
-
Fit affine transformation first, then initialize spline with it.
Output Options
- --final-cp-spacing <double>
-
Final control point grid spacing of the output B-spline transformation.
[Default: 0]
- --final-cp-dims <string>
-
Final control point grid dimensions (i.e., number of controlpoints) of the output B-spline transformation. To be provided as 'dimX,dimY,dimZ'.
[Default: NONE]
AUTHORS
Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, Daniel B. Russakoff, and Yaroslav Halchenko
ACKNOWLEDGMENTS
CMTK is developed with support from the NIAAA under Grant AA021697, National Consortium on Alcohol and Neurodevelopment in Adolescence (N-CANDA): Data Integration Component. From April 2009 through September 2011, CMTK development and maintenance was supported by the NIBIB under Grant EB008381.
