fpenny(1) Penny algorithm, branch-and-bound


fpenny -infile discretestates [-weights properties] [-ancfile properties] [-mixfile properties] -method list [-outgrno integer] [-howmany integer] [-howoften integer] [-simple boolean] [-threshold float] -outfile outfile [-trout toggle] -outtreefile outfile [-printdata boolean] [-progress boolean] [-treeprint boolean] [-stepbox boolean] [-ancseq boolean]
fpenny -help



is a command line program from EMBOSS ("the European Molecular Biology Open Software Suite"). It is part of the "Phylogeny:Discrete characters" command group(s).


Input section

-infile discretestates

File containing one or more data sets

-weights properties

-ancfile properties

-mixfile properties

Additional section

-method list

Default value: Wagner

-outgrno integer

-howmany integer

Default value: 1000

-howoften integer

Default value: 100

-simple boolean

-threshold float

Default value: $(infile.discretesize)

Output section

-outfile outfile

-trout toggle

Default value: Y

-outtreefile outfile

-printdata boolean

Default value: N

-progress boolean

Default value: Y

-treeprint boolean

Default value: Y

-stepbox boolean

Default value: N

-ancseq boolean

Default value: N


Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).


Debian Med Packaging Team <[email protected]>

Wrote the script used to autogenerate this manual page.


This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.