fprotdist(1) Protein distance algorithm


fprotdist -sequence seqsetall [-ncategories integer] -rate array -categories properties [-weights properties] -method list -gamma list -gammacoefficient float -invarcoefficient float -aacateg list -whichcode list -ease float -ttratio float -basefreq array -outfile outfile [-printdata boolean] [-progress boolean]
fprotdist -help



is a command line program from EMBOSS ("the European Molecular Biology Open Software Suite"). It is part of the "Phylogeny:Molecular sequence" command group(s).


Input section

-sequence seqsetall

File containing one or more sequence alignments

-ncategories integer

Default value: 1

-rate array

-categories properties

-weights properties

Additional section

-method list

Default value: j

-gamma list

Default value: c

-gammacoefficient float

Default value: 1

-invarcoefficient float

Default value: 1

-aacateg list

Default value: G

-whichcode list

Default value: u

-ease float

Default value: 0.457

-ttratio float

Default value: 2.0

-basefreq array

Default value: 0.25 0.25 0.25 0.25

Output section

-outfile outfile

-printdata boolean

Default value: N

-progress boolean

Default value: Y


Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).


Debian Med Packaging Team <[email protected]>

Wrote the script used to autogenerate this manual page.


This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.