man fprotdist (1): Protein distance algorithm

SYNOPSIS

fprotdist -sequence seqsetall [-ncategories integer] -rate array -categories properties [-weights properties] -method list -gamma list -gammacoefficient float -invarcoefficient float -aacateg list -whichcode list -ease float -ttratio float -basefreq array -outfile outfile [-printdata boolean] [-progress boolean]
fprotdist -help

DESCRIPTION

fprotdist

is a command line program from EMBOSS ("the European Molecular Biology Open Software Suite"). It is part of the "Phylogeny:Molecular sequence" command group(s).

OPTIONS

Input section

-sequence seqsetall

: File containing one or more sequence alignments

-ncategories integer

: Default value: 1

-rate array

-categories properties

-weights properties

Additional section

-method list

: Default value: j

-gamma list

: Default value: c

-gammacoefficient float

: Default value: 1

-invarcoefficient float

: Default value: 1

-aacateg list

: Default value: G

-whichcode list

: Default value: u

-ease float

: Default value: 0.457

-ttratio float

: Default value: 2.0

-basefreq array

: Default value: 0.25 0.25 0.25 0.25

Output section

-outfile outfile

-printdata boolean

: Default value: N

-progress boolean

: Default value: Y

BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

AUTHOR

Debian Med Packaging Team <[email protected]>

: Wrote the script used to autogenerate this manual page.

COPYRIGHT

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.