man fprotpars (1): Protein parsimony algorithm

SYNOPSIS

fprotpars -sequence seqsetall -intreefile tree [-weights properties] -njumble integer -seed integer [-outgrno integer] [-thresh toggle] -threshold float [-whichcode list] -outfile outfile [-trout toggle] -outtreefile outfile [-printdata boolean] [-progress boolean] [-treeprint boolean] [-stepbox boolean] [-ancseq boolean] -dotdiff boolean
fprotpars -help

DESCRIPTION

fprotpars

is a command line program from EMBOSS ("the European Molecular Biology Open Software Suite"). It is part of the "Phylogeny:Molecular sequence" command group(s).

OPTIONS

Input section

-sequence seqsetall

: File containing one or more sequence alignments

-intreefile tree

-weights properties

Additional section

-njumble integer

-seed integer

: Default value: 1

-outgrno integer

-thresh toggle

: Default value: N

-threshold float

: Default value: 1

-whichcode list

: Default value: Universal

Output section

-outfile outfile

-trout toggle

: Default value: Y

-outtreefile outfile

-printdata boolean

: Default value: N

-progress boolean

: Default value: Y

-treeprint boolean

: Default value: Y

-stepbox boolean

: Default value: N

-ancseq boolean

: Default value: N

-dotdiff boolean

: Default value: Y

BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

AUTHOR

Debian Med Packaging Team <[email protected]>

: Wrote the script used to autogenerate this manual page.

COPYRIGHT

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.