man frestml (1): Restriction site maximum Likelihood method

SYNOPSIS

frestml -data discretestates [-weights properties] -intreefile tree [-njumble integer] -seed integer [-outgrno integer] [-allsites boolean] -lengths boolean [-sitelength integer] -global boolean -rough boolean -outfile outfile [-trout toggle] -outtreefile outfile [-printdata boolean] [-progress boolean] [-treeprint boolean]
frestml -help

DESCRIPTION

frestml

is a command line program from EMBOSS ("the European Molecular Biology Open Software Suite"). It is part of the "Phylogeny:Molecular sequence" command group(s).

OPTIONS

Input section

-data discretestates

: File containing one or more sets of restriction data

-weights properties

: Weights file

-intreefile tree

Additional section

-njumble integer

-seed integer

: Default value: 1

-outgrno integer

-allsites boolean

: Default value: Y

-lengths boolean

: Default value: N

-sitelength integer

: Default value: 6

-global boolean

: Default value: N

-rough boolean

: Default value: Y

Output section

-outfile outfile

-trout toggle

: Default value: Y

-outtreefile outfile

-printdata boolean

: Default value: N

-progress boolean

: Default value: Y

-treeprint boolean

: Default value: Y

BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

AUTHOR

Debian Med Packaging Team <[email protected]>

: Wrote the script used to autogenerate this manual page.

COPYRIGHT

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.