SYNOPSIS
gt encseq encode sequence_file [sequence_file [sequence_file ...]]
DESCRIPTION
-showstats [yes|no]
- show compression results (default: no)
-ssp [yes|no]
- output sequence separator positions to file (default: yes)
-des [yes|no]
- output sequence descriptions to file (default: yes)
-sds [yes|no]
- output sequence description separator positions to file (default: yes)
-md5 [yes|no]
- output MD5 sums to file (default: yes)
-clipdesc [yes|no]
- clip descriptions after first whitespace (default: no)
-sat [string]
- specify kind of sequence representation by one of the keywords direct, bytecompress, eqlen, bit, uchar, ushort, uint32 (default: undefined)
-dna [yes|no]
- input is DNA sequence (default: no)
-protein [yes|no]
- input is protein sequence (default: no)
-plain [yes|no]
- process as plain text (default: no)
-indexname [string]
- specify name for index to be generated (default: undefined)
-smap [string]
- specify file containing a symbol mapping (default: undefined)
-lossless [yes|no]
- allow lossless original sequence retrieval (default: no)
-v [yes|no]
- be verbose (default: no)
-help
- display help for basic options and exit
-help+
- display help for all options and exit
-version
- display version information and exit