gt-seq(1) Parse the given sequence file(s) and construct the corresponding index files.


gt seq [option ...] sequence_file [...]


-recreate [yes|no]

recreate index files, even if they exist already (default: no)

-showfasta [yes|no]

show all sequences (in FASTA format) (default: no)

-showseqnum [value]

show sequence with given number (in FASTA format) (default: undefined)

-gc-content [yes|no]

print GC-content (for DNA files) (default: no)

-stat [yes|no]

show sequence statistics (default: no)

-seqlengthdistri [yes|no]

show sequence length distribution (default: no)

-width [value]

set output width for FASTA sequence printing (0 disables formatting) (default: 0)

-o [filename]

redirect output to specified file (default: undefined)

-gzip [yes|no]

write gzip compressed output file (default: no)

-bzip2 [yes|no]

write bzip2 compressed output file (default: no)

-force [yes|no]

force writing to output file (default: no)


display help and exit


display version information and exit


Report bugs to <[email protected]>.