SYNOPSIS
gt tallymer occratio [options] -esa suffixerator-index [options]
DESCRIPTION
-esa [string]
- specify suffixerator-index (mandatory option) (default: undefined)
-minmersize [value]
- specify minimum mer size for which to compute the occurrence distribution (default: 0)
-maxmersize [value]
- specify maximum mer size for which to compute the occurrence distribution (default: 0)
-step [value]
- specify step size when specifying mer sizes (default: 1)
-mersizes
- specify mer sizes as non-empty sequence of non decreasing positive integers
-output
- use combination of the following keywords: unique nonunique nonuniquemulti relative total to specify kind of output
-scan [yes|no]
- read suffixerator-index sequentially instead of mapping it to memory (default: no)
-v [yes|no]
- be verbose (default: no)
-help
- display help and exit
-version
- display version information and exit