SYNOPSIS
gt tallymer search [options] -tyr tallymer-index -q queryfile0 [queryfile1..] [options]
DESCRIPTION
-tyr [string]
- specify tallymer-index (default: undefined)
-q
- specify query file names
-strand [string]
- specify the strand to be searched: use f (for forward strand) or p (for reverse complemented strand) or fp (for both); default is f (default: f)
-output
- specify output flags (qseqnum, qpos, counts, sequence)
-v [yes|no]
- be verbose (default: no)
-help
- display help and exit
-version
- display version information and exit