SYNOPSIS

cufflinks [,options/] ,<transcripts1.gtf,/...,,transcriptsN.gtf> <out.sam>/

DESCRIPTION

gtf_to_sam v2.2.1 linked against Boost version 105500 -----------------------------

OPTIONS

-r/--reference-seq reference fasta file [ default: NULL ] -F/--raw-fpkm use FPKM instead of isoform fraction