insdseqget(1)
format sequences from GenBank as an XML INSDSet
SYNOPSIS
insdseqget
[-]
[-d filename]
[-i filename]
[-m n/p/b]
[-n]
[-o filename]
[-v]
DESCRIPTION
insdseqget retrieves biological sequence data from GenBank
(according to an input list of GI accession numbers) and prints it out
as an XML INSDSet document.
OPTIONS
A summary of options is included below.
- -
-
Print usage message
- -d filename
-
Input file name for date list (desired accessions, one per line,
followed by a blank line and a list of allowed dates, also one per line)
- -i filename
-
Input file name for GI list (default = stdin)
- -m n/p/b
-
Molecule type:
-
- n
-
Nucleotide (default)
- p
-
Protein
- b
-
Both
- -n
-
Return only new records (for which the given GI refers to an old version)
- -o filename
-
Output file name for the XML INSDSet (default = stdout)
- -v
-
Fetch SNP Variations
AUTHOR
The National Center for Biotechnology Information.