SYNOPSIS
kmc_tools sort <inputdb> [input_params] <output> [output_params]
DESCRIPTION
Converts database produced by KMC2.x to KMC1.x database format (which contains k-mers in sorted order)
OPTIONS
For each input there are additional parameters:
-ci<value>
- exclude k-mers occurring less than <value> times
-cx<value>
- exclude k-mers occurring more of than <value> times
For output there are additional parameters:
-cs<value>
- maximal value of a counter
EXAMPLE
-
kmc_tools sort wy_kmc2 -ci3 -cx1000 wy_kmc1 -cs255
AUTHOR
KMC was originally written by:
- • Sebastian Deorowicz (
- • Marek Kokot
- • Szymon Grabowski
- • Agnieszka Debudaj-Grabysz
COPYING
KMC is a free software distributed under GNU GPL3 licence for academic, research, and commercial use.