SYNOPSIS

last-dotplot ,--help/
last-dotplot [,options/] ,maf-or-tab-alignments dotplot.png/
last-dotplot [,options/] ,maf-or-tab-alignments dotplot.gif/
...

DESCRIPTION

Draw a dotplot of pair-wise sequence alignments in MAF or tabular format.

OPTIONS

-h, --help

show this help message and exit

-1 PATTERN, --seq1=,PATTERN/

which sequences to show from the 1st genome

-2 PATTERN, --seq2=,PATTERN/

which sequences to show from the 2nd genome

-x WIDTH, --width=,WIDTH/

maximum width in pixels (default: 1000)

-y HEIGHT, --height=,HEIGHT/

maximum height in pixels (default: 1000)

-f FILE, --fontfile=,FILE/

TrueType or OpenType font file

-s SIZE, --fontsize=,SIZE/

TrueType or OpenType font size (default: 11)

-c COLOR, --forwardcolor=,COLOR/

color for forward alignments (default: red)

-r COLOR, --reversecolor=,COLOR/

color for reverse alignments (default: blue)

Unsequenced gap options:

--gap1=,FILE/

read genome1 unsequenced gaps from agp or gap file

--gap2=,FILE/

read genome2 unsequenced gaps from agp or gap file

--bridged-color=,COLOR/

color for bridged gaps (default: yellow)

--unbridged-color=,COLOR/

color for unbridged gaps (default: pink)