SYNOPSIS
lvote [options] targetImage atlasIntensity1 atlasLabels1 [atlasIntensity2 atlasLabels2 [...]]DESCRIPTION
This tool combines multiple segmentations fro co-registered and reformatted atlases using locally-weighted voting.OPTIONS
Global Toolkit Options (these are shared by all CMTK tools)
- --help
- Write list of basic command line options to standard output.
- --help-all
- Write complete list of basic and advanced command line options to standard output.
- --wiki
- Write list of command line options to standard output in MediaWiki markup.
- --man
- Write man page source in 'nroff' markup to standard output.
- --version
- Write toolkit version to standard output.
- --echo
- Write the current command line to standard output.
- --verbose-level <integer>
- Set verbosity level.
- --verbose, -v
- Increment verbosity level by 1 (deprecated; supported for backward compatibility).
- --threads <integer>
- Set maximum number of parallel threads (for POSIX threads and OpenMP).
Input Options
- --set-padding-value <double>
- Set padding value for input intensity images. Pixels with this value will be ignored. [Default: disabled]
Label Combination Options
- --patch-radius <none>
- Radius of image patch (in pixels) used for local similarity computation. [Default: 5]
- --use-global-weights
- Use global weights per atlas to normalize the patch-pased local similarity scores.
- --no-global-outliers
- Detect and exclude global outliers by removing poorly correlated atlases prior to local voting procedure.
Output Options
- --output <string>, -o <string>
- File system path for the output image. [Default: lvote.nii]
AUTHORS
Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, Daniel B. Russakoff, and Yaroslav HalchenkoBUGS
Report bugs at http://nitrc.org/projects/cmtk/ACKNOWLEDGMENTS
CMTK is developed with support from the NIAAA under Grant AA021697, National Consortium on Alcohol and Neurodevelopment in Adolescence (N-CANDA): Data Integration Component. From April 2009 through September 2011, CMTK development and maintenance was supported by the NIBIB under Grant EB008381.