DESCRIPTION

Usage:

maf-convert --help maf-convert axt mafFile(s) maf-convert blast mafFile(s) maf-convert blasttab mafFile(s) maf-convert html mafFile(s) maf-convert psl mafFile(s) maf-convert sam mafFile(s) maf-convert tab mafFile(s)

Read MAF-format alignments & write them in another format.

OPTIONS

-h, --help

show this help message and exit

-p, --protein

assume protein alignments, for psl match counts

-n, --noheader

omit any header lines from the output

-d, --dictionary

include dictionary of sequence lengths in sam format

-f DICTFILE, --dictfile=,DICTFILE/

get sequence dictionary from DICTFILE

-r READGROUP, --readgroup=,READGROUP/

read group info for sam format

-l LINESIZE, --linesize=,LINESIZE/

line length for blast and html formats (default: 60)