DESCRIPTION
Usage:
- maf-convert.py --help maf-convert.py axt my-alignments.maf maf-convert.py blast my-alignments.maf maf-convert.py html my-alignments.maf maf-convert.py psl my-alignments.maf maf-convert.py sam my-alignments.maf maf-convert.py tab my-alignments.maf
Read MAF-format alignments & write them in another format.
OPTIONS
- -h, --help
- show this help message and exit
- -p, --protein
- assume protein alignments, for psl match counts
- -d, --dictionary
- include dictionary of sequence lengths in sam format
- -l LINESIZE, --linesize=LINESIZE
-
line length for blast and html formats (default: 60)