maf-convert.py(1) Convert MAF-format alignments to tabular format

DESCRIPTION

Usage:

maf-convert.py --help maf-convert.py axt my-alignments.maf maf-convert.py blast my-alignments.maf maf-convert.py html my-alignments.maf maf-convert.py psl my-alignments.maf maf-convert.py sam my-alignments.maf maf-convert.py tab my-alignments.maf

Read MAF-format alignments & write them in another format.

OPTIONS

-h, --help
show this help message and exit
-p, --protein
assume protein alignments, for psl match counts
-d, --dictionary
include dictionary of sequence lengths in sam format
-l LINESIZE, --linesize=LINESIZE
line length for blast and html formats (default: 60)