maf-cull.py(1) Cull alignments whose top-sequence coordinates are contained in LIMIT or more

SYNOPSIS

maf-cull.py [options] my-alignments.maf

DESCRIPTION

Cull alignments whose top-sequence coordinates are contained in LIMIT or more higher-scoring alignments.

OPTIONS

-h, --help
show this help message and exit
-l LIMIT, --limit=LIMIT
culling limit (default: 2)