DESCRIPTION

Error : Option '--k' is mandatory Error : Option '--starters' is mandatory Error : Option '--reads' is mandatory Error : Option '--output' is mandatory USAGE for 'mapsembler2_extremities'

--k

(1 arg) : kmer size that will be used for mapsembler2 [default '']

--starters

(1 arg) : starters fasta file [default '']

--reads

(1 arg) : reads dataset file name. Several reads sets can be provided, surrounded by "'s and separated by a space (e.g. --reads "reads1.fa reads2.fa") [default '']

--output

(1 arg) : output substarters file name [default '']

--min-solid-subkmer (1 arg) :

minimim abundance to keep a subkmer [default '3']

-debug

(0 arg) : debugging

-nb-cores

(1 arg) : number of cores [default '0']

-verbose

(1 arg) : verbosity level [default '1']

-help

(0 arg) : display help about possible options