SYNOPSIS
mia-2dto3dimageb -o <out-file> [options] <PLUGINS:2dimage/io>DESCRIPTION
mia-2dto3dimageb This program is used to convert a series 2D images into a 3D image. The 2D images are read as additional command line parameters and the slice ordering corresponds to the ordering of the file names on the commend line.OPTIONS
-
- -o --out-file=(output, required); io
- output file name For supported file types see PLUGINS:3dimage/io
Help & Info
-
- -V --verbose=warning
-
verbosity of output, print messages of given level and higher priorities. Supported priorities starting at lowest level are:
- info - Low level messages
- trace - Function call trace
- fail - Report test failures
- warning - Warnings
- error - Report errors
- debug - Debug output
- message - Normal messages
- fatal - Report only fatal errors
- --copyright
- print copyright information
- -h --help
- print this help
- -? --usage
- print a short help
- --version
- print the version number and exit
Processing
-
- --threads=-1
- Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).
PLUGINS: 2dimage/io
- bmp
- BMP 2D-image input/output support
- Recognized file extensions: .BMP, .bmp
-
Supported element types:
- binary data, unsigned 8 bit, unsigned 16 bit
- datapool
- Virtual IO to and from the internal data pool
- Recognized file extensions: .@
- dicom
- 2D image io for DICOM
- Recognized file extensions: .DCM, .dcm
-
Supported element types:
- signed 16 bit, unsigned 16 bit
- exr
- a 2dimage io plugin for OpenEXR images
- Recognized file extensions: .EXR, .exr
-
Supported element types:
- unsigned 32 bit, floating point 32 bit
- jpg
- a 2dimage io plugin for jpeg gray scale images
- Recognized file extensions: .JPEG, .JPG, .jpeg, .jpg
-
Supported element types:
- unsigned 8 bit
- png
- a 2dimage io plugin for png images
- Recognized file extensions: .PNG, .png
-
Supported element types:
- binary data, unsigned 8 bit, unsigned 16 bit
- raw
- RAW 2D-image output support
- Recognized file extensions: .RAW, .raw
-
Supported element types:
- binary data, signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit
- tif
- TIFF 2D-image input/output support
- Recognized file extensions: .TIF, .TIFF, .tif, .tiff
-
Supported element types:
- binary data, unsigned 8 bit, unsigned 16 bit, unsigned 32 bit
- vista
- a 2dimage io plugin for vista images
- Recognized file extensions: .V, .VISTA, .v, .vista
-
Supported element types:
- binary data, signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit
PLUGINS: 3dimage/io
- analyze
- Analyze 7.5 image
- Recognized file extensions: .HDR, .hdr
-
Supported element types:
- unsigned 8 bit, signed 16 bit, signed 32 bit, floating point 32 bit, floating point 64 bit
- datapool
- Virtual IO to and from the internal data pool
- Recognized file extensions: .@
- dicom
- Dicom image series as 3D
- Recognized file extensions: .DCM, .dcm
-
Supported element types:
- signed 16 bit, unsigned 16 bit
- hdf5
- HDF5 3D image IO
- Recognized file extensions: .H5, .h5
-
Supported element types:
- binary data, signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, signed 64 bit, unsigned 64 bit, floating point 32 bit, floating point 64 bit
- inria
- INRIA image
- Recognized file extensions: .INR, .inr
-
Supported element types:
- signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit
- mhd
- MetaIO 3D image IO using the VTK implementation (experimental).
- Recognized file extensions: .MHA, .MHD, .mha, .mhd
-
Supported element types:
- signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit
- nifti
- NIFTI-1 3D image IO
- Recognized file extensions: .NII, .nii
-
Supported element types:
- signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, signed 64 bit, unsigned 64 bit, floating point 32 bit, floating point 64 bit
- vff
- VFF Sun raster format
- Recognized file extensions: .VFF, .vff
-
Supported element types:
- unsigned 8 bit, signed 16 bit
- vista
- Vista 3D
- Recognized file extensions: .V, .VISTA, .v, .vista
-
Supported element types:
- binary data, signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit
- vti
- 3D image VTK-XML in- and output (experimental).
- Recognized file extensions: .VTI, .vti
-
Supported element types:
- signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit
- vtk
- 3D VTK image legacy in- and output (experimental).
- Recognized file extensions: .VTK, .VTKIMAGE, .vtk, .vtkimage
-
Supported element types:
- binary data, signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit
EXAMPLE
Convert a series of images imageXXXX.png to a 3D image 3d.v- mia-2dto3dimageb -i imageXXXX.png -o 3d.v
AUTHOR(s)
Gert WollnyCOPYRIGHT
This software is Copyright (c) 1999-2015 Leipzig, Germany and Madrid, Spain. It comes with ABSOLUTELY NO WARRANTY and you may redistribute it under the terms of the GNU GENERAL PUBLIC LICENSE Version 3 (or later). For more information run the program with the option '--copyright'.