SYNOPSIS

MolPhy Utilities is a program package for MOLecular PHYlogenetics which includes several Perl utilities:

mollist [sequence_file]
molrev [sequence_file]
molcat [sequence_file]
molcut [sequence_file]
molmerge [sequence_file]
nuc2ptn [switches] [sequence_file]
rminsdel [switches] [sequence_file]
molcodon [sequence_file]
molinfo [switches] [sequence_file]
mol2mol [sequence_file]
inl2mol [sequence_file]
mol2int [sequence_file]
mol2phy [sequence_file]
phy2mol [sequence_file]
must2mol [sequence_file]
ali2mol [sequence_file]
clus2mol [sequence_file]
degene4l [switches] [sequence_file]
degene4 [switches] [sequence_file]
disjoint [sequence_file]
dna2ami [options] [no_align_files]
eali2mol [EMBL_ALIGN_file]
egetcds [EMBL_file]
getcds [EMBL_file]
egetcds [Genbank_file]
info2mol [sequence_file]
infocode [switches] [sequence_file]
infocode [switches] [sequence_file]
mc2mol [sequence_file]
mega2mol [sequence_file]
mol2info [sequence_file]
mol2seq [sequence_file]
molcons [sequence_file]
molsplit [sequence_file]
njt2tpl [machine_readable_tree_with_branch_length]
mol2mol [sequence_file]
nuc2NUC [sequence_file]
rmid3 [switches] [sequence_file]
rmleu [switches] [sequence_file]
rmsyno [switches] [sequence_file]
seq2mol [sequence_file]
seqwrap [file]

DESCRIPTION

This is the Debian GNU/Linux version of the MOLPHY (ProtML) distribution, version 2.3. Copyright (c) 1992-1996, Jun Adachi & Masami Hasegawa. All rights reserved.

MOLPHY is a program package for MOLecular PHYlogenetics.

The perl utilities above are usefull to convert different formats of phylogenetic data.

AUTHOR

This manual page was written by Andreas Tille <[email protected]>, for the Debian GNU/Linux system (but may be used by others).