names2kog.pl(1) builds a kog-set based only on gene names

SYNOPSIS

names2kog.pl [options] <input1> [input2 ... ] [output file]

OPTIONS

If ``output file'' exists, it is considered an input file.

Note: you can redefine what is considered a ``name'' from the .overrides file (like say, to ``product'' or something).

 Other options:
--kog <seq_number>=<species> => for manually specifying 3 letter cog species
-o<filename>                 =>specify the output file.