ParsInsert(1) Parsimonious Insertion of unclassified sequences into phylogenetic tree


parsinsert [options] <insert_sequences>

Perform Insertion of Sequences into Given Tree

-m <mask file> - read mask from this file
-s <tree sequences> - read core tree sequences from this file
(default: PI_Tree.fasta)
-t <tree file> - read core tree from this file
(default: PI_Tree.tree)
-x <tree taxonomy> - read core tree taxomony from this file
-o <output file> - output taxonomy for each insert sequence to this file
(default: PI_Results.log)
-l [-|<log file>] - create log file (default is ParsInsert.log)
-n# - number of best matches to display
-c# - percent threshold cutoff
-p - print node comments in newick file
-D# - print branch lengths using # decimal places
tree sequence file: PI_Tree.fasta


Copyright (C) 2007-2011 David Knox

This program comes with ABSOLUTELY NO WARRANTY

This is free software, and you are welcome to redistribute under certain conditions - see /usr/share/common-licenses/GPL-3.