DESCRIPTION
parsinsert [options] <insert_sequences>
Perform Insertion of Sequences into Given Tree
-
-m <mask file> - read mask from this file
- -s <tree sequences> - read core tree sequences from this file
- (default: PI_Tree.fasta)
- -t <tree file> - read core tree from this file
- (default: PI_Tree.tree)
-
-x <tree taxonomy> - read core tree taxomony from this file
- -o <output file> - output taxonomy for each insert sequence to this file
- (default: PI_Results.log)
-
-l [-|<log file>] - create log file (default is ParsInsert.log)
- -n# - number of best matches to display
- -c# - percent threshold cutoff
- -p - print node comments in newick file
- -D# - print branch lengths using # decimal places
- -n# - number of best matches to display
- tree sequence file: PI_Tree.fasta
LICENSE
Copyright (C) 2007-2011 David KnoxThis program comes with ABSOLUTELY NO WARRANTY
This is free software, and you are welcome to redistribute under certain conditions - see /usr/share/common-licenses/GPL-3.