SYNOPSIS

pepwheel -sequence sequence -wheel boolean [-steps integer] [-turns integer] -graph graph -amphipathic toggle -squares string -diamonds string -octags string

pepwheel -help

DESCRIPTION

pepwheel

OPTIONS

Input section

-sequence sequence

Output section

-wheel boolean

Default value: Y

-steps integer

The number of residues plotted per turn is this value divided by the 'turns' value. Default value: 18

-turns integer

The number of residues plotted per turn is the 'steps' value divided by this value. Default value: 5

-graph graph

Markup section

-amphipathic toggle

If this is true then the residues ACFGILMVWY are marked as squares and all other residues are unmarked. This overrides any other markup that you may have specified using the qualifiers '-squares', '-diamonds' and '-octags'.

-squares string

By default the aliphatic residues ILVM are marked with squares. Default value: ILVM

-diamonds string

By default the residues DENQST are marked with diamonds. Default value: DENQST

-octags string

By default the positively charged residues HKR are marked with octagons. Default value: HKR

AUTHOR

Debian Med Packaging Team <[email protected]>

Wrote the script used to autogenerate this manual page.

COPYRIGHT

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.