SYNOPSIS
-
prima -sequence sequence -targetrange toggle -targetstart integer -targetend integer -mintmprimer float -maxtmprimer float -minplen integer -maxplen integer -minpgccont float -maxpgccont float [-primer toggle] -minprimerlen integer -maxprimerlen integer -minpmgccont float -maxpmgccont float -overlap integer -saltconc float -dnaconc float -list boolean -outfile outfile
- prima -help
DESCRIPTION
prima
OPTIONS
Input section
-sequence sequence
Required section
Target options
-targetrange toggle
- Default value: N
-targetstart integer
- Default value: $(sequence.begin)
-targetend integer
- Default value: $(sequence.length)
-mintmprimer float
- Default value: 53
-maxtmprimer float
- Default value: 58
Additional section
Product options
-minplen integer
- Default value: 100
-maxplen integer
- Default value: 300
-minpgccont float
- Default value: .40
-maxpgccont float
- Default value: .55
Primer options
-primer toggle
- Specify primer properties Default value: Y
-minprimerlen integer
- Default value: 18
-maxprimerlen integer
- Default value: 22
-minpmgccont float
- Default value: .40
-maxpmgccont float
- Default value: .55
Advanced section
-overlap integer
- Default value: 50
-saltconc float
- Default value: 50
-dnaconc float
- Default value: 50
-list boolean
- Default value: N
Output section
-outfile outfile
BUGS
Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).
AUTHOR
Debian Med Packaging Team <[email protected]>
- Wrote the script used to autogenerate this manual page.
COPYRIGHT
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.