qlob.pl(1) run quick mursaki compare


qlob.pl [options] {genome list...}

qlob is a frontend to murasaki (through qsub if it's available). It automatically generates an output name for you based on the input files, sets a more reasonable memory limit, runs the job, and generates dot-plot outputs.

In addition to the standard Murasaki options (see murasaki --help), qlob supports some some options of its own:

-P uses an old pattern of 11111100100001111100000100101111
--target=<hostname> requests the job be run on hostname
-n|--name name for the job (allows overwriting of old output)
-m|--mem specifies a memory requirement to pass to qsub (default 4gb)
--mpi=N use MPI across N machines (sets ppn=4 also)
--myrinet require myrinet nodes
--kogfile=<file> Run filter.pl to score alignment using <file>


This program runs several sequences through murasaki. When run on an hpc machine it submits the job via qsub.