rdp-alignment:(1) Ribosomal Database Project (RDP) alignment tools package

SYNOPSIS

rdp-alignment <subcommand> <options>

DESCRIPTION

The Alignment tools package contains commands to do defined community analysis, pairwise alignment and hidden markov model (HMMER3 models, no training).

OPTIONS

List of subcommands:
alignment-merger
- Merge alignments
pairwise-knn
- Compute k-nearest-neighbors by pairwise alignment
compare-error-type
- Detect insertion, deletion and substitution errors in sequences comparing to reference sequences
align-nucl-to-prot
- Transfer a sequence alignment from protein sequences to nucleotide sequences
rm-partialseq
- remove partial sequences based on pairwise alignment to reference sequences