SYNOPSIS
Usage:search2bsml [-o outputfile] [-f reportformat] [-i inputfilename] OR file1 file2 ..
DESCRIPTION
This script will turn a protein Search report (BLASTP, FASTP, SSEARCH, AXT, WABA, SIM4) into a BSML File.The options are:
-i infilename - (optional) inputfilename, will read either ARGV files or from STDIN -o filename - the output filename [default STDOUT] -f format - search result format (blast, fasta,waba,axt) (ssearch is fasta format). default is blast. -h - this help menu
Additionally specify the filenames you want to process on the command-line. If no files are specified then STDIN input is assumed. You specify this by doing: search2gff < file1 file2 file3
AUTHOR
Jason Stajich, jason-at-bioperl-dot-org