snap-aligner(1) scalable nucleotide alignment program

SYNOPSIS

snap-aligner ,<command> /[,<options>/]

DESCRIPTION

Welcome to SNAP version 1.0beta.18.

Commands:

index
build a genome index
single
align single-end reads
paired
align paired-end reads
daemon
run in daemon mode--accept commands remotely

Type a command without arguments to see its help.