SYNOPSIS

OPTIONS

-h, --help

show this help message and exit

-o OUTPUT_FILENAME, --output=OUTPUT_FILENAME

Output file name

-l LOG_FILENAME, --log=LOG_FILENAME

Log file name

--DD=TMP_DIRECTORY, --tmp_dir=TMP_DIRECTORY

Temporary data directory

-u NCPU, --ncpu=NCPU

Number of processes used in training

-b BSIZE, --block_size=BSIZE

Split data into blocks of specified size

--nh=NHASH, --n_hash_block=NHASH

Split hash table into n tables

--rm=READ_MERGE, --read_merge_size=READ_MERGE

Merge n hash tables at a time

--hm=HASH_MERGE, --hash_merge_batch_size=HASH_MERGE

Merge n adjacency lists at a time

-k K, --kmer=K

k-mer size used for hashing

-e E, --min_error_tolerance=E

Minimum error tolerance for parameter searching

-E E, --max_error_tolerance=E

Maximum error tolerance for parameter searching

--hh=H, --min_minimum_overlap=H

Minimum minimum overlap length for parameter searching

--hH=H, --max_minimum_overlap=H

Maximum minimum overlap length for parameter searching

--h_rate=H_RATE, --heterozygous_rate=H_RATE

Rate for heterozygous site

--model_selection_size=MSIZE

Model selection data set size

--keep_all_files

Keep all temporary files. By default, temporary files are deleted automatically.

-h, --help

show this help message and exit

-o OUTPUT_FILENAME, --output=OUTPUT_FILENAME

Output file name

-l LOG_FILENAME, --log=LOG_FILENAME

Log file name

--DD=TMP_DIRECTORY, --tmp_dir=TMP_DIRECTORY

Temporary data directory

-u NCPU, --ncpu=NCPU

Number of processes used in training

-b BSIZE, --block_size=BSIZE

Split data into blocks of specified size

--nh=NHASH, --n_hash_block=NHASH

Split hash table into n tables

--rm=READ_MERGE, --read_merge_size=READ_MERGE

Merge n hash tables at a time

--hm=HASH_MERGE, --hash_merge_batch_size=HASH_MERGE

Merge n adjacency lists at a time

-k K, --kmer=K

k-mer size used for hashing

-e E, --min_error_tolerance=E

Minimum error tolerance for parameter searching

-E E, --max_error_tolerance=E

Maximum error tolerance for parameter searching

--hh=H, --min_minimum_overlap=H

Minimum minimum overlap length for parameter searching

--hH=H, --max_minimum_overlap=H

Maximum minimum overlap length for parameter searching

--h_rate=H_RATE, --heterozygous_rate=H_RATE

Rate for heterozygous site

--model_selection_size=MSIZE

Model selection data set size

--keep_all_files

Keep all temporary files. By default, temporary files are deleted automatically.