wgsim(1) short read simulator

SYNOPSIS

wgsim [,options/] ,<in.ref.fa> <out.read1.fq> <out.read2.fq>/

OPTIONS

-e FLOAT
base error rate [0.020]
-d INT
outer distance between the two ends [500]
-s INT
standard deviation [50]
-N INT
number of read pairs [1000000]
-1 INT
length of the first read [70]
-2 INT
length of the second read [70]
-r FLOAT
rate of mutations [0.0010]
-R FLOAT
fraction of indels [0.15]
-X FLOAT
probability an indel is extended [0.30]
-S INT
seed for random generator [-1]
-h
haplotype mode

AUTHOR

The software was written by Heng Li <[email protected]>

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.