## SYNOPSIS

**wgsim**[

*,options/*]

*,<in.ref.fa> <out.read1.fq> <out.read2.fq>/*

## OPTIONS

**-e**FLOAT- base error rate [0.020]
**-d**INT- outer distance between the two ends [500]
**-s**INT- standard deviation [50]
**-N**INT- number of read pairs [1000000]
**-1**INT- length of the first read [70]
**-2**INT- length of the second read [70]
**-r**FLOAT- rate of mutations [0.0010]
**-R**FLOAT- fraction of indels [0.15]
**-X**FLOAT- probability an indel is extended [0.30]
**-S**INT- seed for random generator [-1]
**-h**- haplotype mode

## AUTHOR

The software was written by Heng Li <[email protected]>This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.