ariba-getref(1) Download reference data


ariba ,getref /[,options/] ,<argannot|card|resfinder|vfdb> <outprefix>/


ARIBA is a tool that identifies antibiotic resistance genes by running local assemblies.

More information on the individual subtools can be found on the ARIBA wiki:

Downloads reference data

positional arguments:

Database to download. Must be one of: argannot card resfinder vfdb
Prefix of output filenames

optional arguments:

-h, --help
show this help message and exit
--genetic_code INT
Number of genetic code to use. Currently supported 1,4,11 [11]


This tool is developed and maintained by the Pathogen Informatics group at the Wellcome Trust Sanger Institute under the GNU General Public License, version 3.