VERSION

version 3.6.3

SYNOPSIS

Wrapper around MCL which takes in blast results and outputs clustered results

use Bio::Roary::External::Mcl;

my $mcl= Bio::Roary::External::Mcl->new(
blast_results => 'db',
mcxdeblast_exec => 'mcxdeblast',
mcl_exec => 'mcl',
output_file => 'output.groups'
);

$mcl->run();

AUTHOR

Andrew J. Page <[email protected]>

COPYRIGHT AND LICENSE

This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

This is free software, licensed under:

  The GNU General Public License, Version 3, June 2007