VERSION

version 3.6.3

SYNOPSIS

Create an embl file for the header with locations of where genes are in the multifasta alignment of core genes
   use Bio::Roary::Output::CoreGeneAlignmentCoordinatesEMBL;

my $obj = Bio::Roary::Output::CoreGeneAlignmentCoordinatesEMBL->new(
output_filename => 'core_alignment_header.embl',
multifasta_files => [
't/data/multifasta_files/1.aln', 't/data/multifasta_files/outof_order.aln',
't/data/multifasta_files/2.aln', 't/data/multifasta_files/3.aln'
],
gene_lengths => {
't/data/multifasta_files/1.aln' => 1,
't/data/multifasta_files/outof_order.aln' => 10,
't/data/multifasta_files/2.aln' => 100,
't/data/multifasta_files/3.aln' => 1000
},
);
$obj->create_file;

AUTHOR

Andrew J. Page <[email protected]>

COPYRIGHT AND LICENSE

This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

This is free software, licensed under:

  The GNU General Public License, Version 3, June 2007