SYNOPSIS

use Bio::Search::HSP::HSPFactory;
my $factory = Bio::Search::HSP::HSPFactory->new();
my $resultobj = $factory->create(@args);

DESCRIPTION

This is a general way of hiding the object creation process so that we can dynamically change the objects that are created by the SearchIO parser depending on what format report we are parsing.

This object is for creating new HSPs.

FEEDBACK

Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.

  [email protected]                  - General discussion
  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

Support

Please direct usage questions or support issues to the mailing list:

[email protected]

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:

  https://github.com/bioperl/bioperl-live/issues

AUTHOR - Jason Stajich

Email jason-at-bioperl.org

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

new

 Title   : new
 Usage   : my $obj = Bio::Search::HSP::HSPFactory->new();
 Function: Builds a new Bio::Search::HSP::HSPFactory object 
 Returns : Bio::Search::HSP::HSPFactory
 Args    :

create

 Title   : create
 Usage   : $factory->create(%args)
 Function: Create a new L<Bio::Search::HSP::HSPI> object  
 Returns : L<Bio::Search::HSP::HSPI>
 Args    : hash of initialization parameters

type

 Title   : type
 Usage   : $factory->type('Bio::Search::HSP::GenericHSP');
 Function: Get/Set the HSP creation type
 Returns : string
 Args    : [optional] string to set