Bio::Tools::Hmmpfam(3) Parser for Hmmpfam program


use Bio::Tools::Hmmpfam;
my @hmmpfam_feat;
my $hmmpfam_parser = Bio::Tools::Hmmpfam->new(-fh =>$filehandle );
while( my $hmmpfam_feat = $hmmpfam_parser->next_result ) {
push @hmmpfam_feat, $hmmpfam_feat;


Parser for Hmmpfam program. See also Bio::SearchIO::hmmer.


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AUTHOR - Balamurugan Kumarasamy

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 The rest of the documentation details each of the object methods.
 Internal methods are usually preceded with a _


 Title   : new
 Usage   : my $obj = Bio::Tools::Hmmpfam->new(-fh=>$filehandle);
 Function: Builds a new Bio::Tools::Hmmpfam object
 Returns : Bio::Tools::Hmmpfam
 Args    : -filename
           -fh (filehandle)


 Title   : next_result
 Usage   : my $feat = $hmmpfam_parser->next_result
 Function: Get the next result set from parser data
 Returns : L<Bio::SeqFeature::Generic>
 Args    : none


 Title   : create_feature
 Usage   : my $feat=$hmmpfam_parser->create_feature($feature,$seqname)
 Function: creates a SeqFeature Generic object
 Returns : L<Bio::SeqFeature::Generic>
 Args    :


 Title   :   seqname
 Usage   :   obj->seqname($seqname)
 Function:   Internal(not to be used directly)
 Returns :
 Args    :   seqname