• gmx-densorder
• gmx-dielectric
• gmx-dipoles
• gmx-disre
• gmx-distance
• gmx-dos
• gmx-do_dssp
• gmx-dump
• gmx-dyecoupl
• gmx-dyndom
• gmx-editconf
• gmx-eneconv
• gmx-enemat
• gmx-energy
• gmx-filter
• gmx-freevolume
• gmx-gangle
• gmx-genconf
• gmx-genion
• gmx-genrestr
• gmx-grompp
• gmx-gyrate
• gmx-h2order
• gmx-hbond
• gmx-helix
• gmx-helixorient
• gmx-help
• gmx-hydorder
• gmx-insert-molecules
• gmx-lie
• gmx-make_edi
• gmx-make_ndx
• gmx-mdmat
• gmx-mdrun
• gmx-mindist
• gmx-mk_angndx
• gmx-morph
• gmx-msd
• gmx-nmeig
• gmx-nmens
• gmx-nmtraj
• gmx-order
• gmx-pairdist
• gmx-pdb2gmx
• gmx-pme_error
• gmx-polystat
• gmx-potential
• gmx-principal
• gmx-rama
• gmx-rdf
• gmx-rms
• gmx-rmsdist
• gmx-rmsf
• gmx-rotacf
• gmx-rotmat
• gmx-saltbr
• gmx-sans
• gmx-sasa
• gmx-saxs
• gmx-select
• gmx-sham
• gmx-sigeps
• gmx-solvate
• gmx-sorient
• gmx-spatial
• gmx-spol
• gmx-tcaf
• gmx-traj
• gmx-trjcat
• gmx-trjconv