SYNOPSIS

copymat [-] [-H] [-P filename] [-W N] [-f X] [-r F]

DESCRIPTION

copymat converts ASCII matrices produced by makemat(1) into a database that can be read into memory quickly.

OPTIONS

A summary of options is included below.

-

Print usage message

-H

Print help; overrides all other arguments

-P filename

Database for matrix profiles (default = stdin)

-W N

Word size for RPS database (default = 3)

-f X

Threshold for extending hits for RPS database (default = 11.0)

-r F

Do not create RPS mem map file(s)

AUTHOR

The National Center for Biotechnology Information.