dbiblast(1) Index a BLAST database


dbiblast -dbname string -directory directory -filenames string -release string -date string -seqtype list -blastversion list -fields list -exclude string -sortoptions string -maxindex integer -systemsort boolean -cleanup boolean -sourcefile boolean -outfile outfile -indexoutdir outdir
dbiblast -help



is a command line program from EMBOSS ("the European Molecular Biology Open Software Suite"). It is part of the "Utils:Database indexing" command group(s).


Input section

-dbname string

-directory directory

Default value: .

-filenames string

Default value: $(dbname)

Required section

-release string

Default value: 0.0

-date string

Default value: 00/00/00

-seqtype list

Default value: unknown

-blastversion list

Default value: unknown

Advanced section

-fields list

Default value: acc

-exclude string

-sortoptions string

Sort options, typically '-T .' to use current directory for work files and '-k 1,1' to force GNU sort to use the first field Default value: -T . -k 1,1

-maxindex integer

-systemsort boolean

Default value: Y

-cleanup boolean

Default value: Y

-sourcefile boolean

Output section

-outfile outfile

-indexoutdir outdir

Default value: .


Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).


Debian Med Packaging Team <[email protected]>

Wrote the script used to autogenerate this manual page.


This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.