debruijn(1)
de Bruijn sequence generator
SYNOPSIS
debruijn
[-]
-a str
-n k
DESCRIPTION
debruijn generates (on standard output) a string over the
specified alphabet containing every possible word (substring) of the
specified length exactly once. Note: Substrings are not taken
to wrap around, so the first k-1 characters repeat at the end.
OPTIONS
A summary of options is included below.
- -
-
Print usage message.
- -a str
-
Alphabet (supply ncbistdaa or ncbi2na for standard
alphabets, or supply your own alphabet).
- -n k
-
Word size.
AUTHOR
The National Center for Biotechnology Information.