man demoalign (1): Reads a sequence set, writes an alignment file

SYNOPSIS

demoalign -sequence seqset [-floatmatrix matrixf] [-intmatrix matrix] -dofloat boolean -outfile align
demoalign -help

DESCRIPTION

demoalign

is a command line program from EMBOSS ("the European Molecular Biology Open Software Suite"). It is part of the "Test" command group(s).

OPTIONS

Input section

-sequence seqset

-floatmatrix matrixf

: This is the scoring matrix file used when comparing sequences. By default it is the file 'EBLOSUM62' (for proteins) or the file 'EDNAFULL' (for nucleic sequences). These files are found in the 'data' directory of the EMBOSS installation.

-intmatrix matrix

: This is the scoring matrix file used when comparing sequences. By default it is the file 'EBLOSUM62' (for proteins) or the file 'EDNAFULL' (for nucleic sequences). These files are found in the 'data' directory of the EMBOSS installation.

Advanced section

-dofloat boolean

Output section

-outfile align

BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

AUTHOR

Debian-Med Packaging Team <[email protected]>

: Wrote the script used to autogenerate this manual page.

COPYRIGHT

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.