man edialign (1): Local multiple alignment of sequences

SYNOPSIS

edialign -sequences seqset -nucmode list -revcomp boolean [-overlapw selection] [-linkage list] [-maxfragl integer] -fragmat boolean -fragsim integer [-itscore boolean] [-threshold float] -mask boolean -dostars boolean -starnum integer -outfile outfile -outseq seqoutall
edialign -help

DESCRIPTION

edialign

is a command line program from EMBOSS ("the European Molecular Biology Open Software Suite"). It is part of the "Alignment:Multiple" command group(s).

OPTIONS

Input section

-sequences seqset

Additional section

-nucmode list

: Nucleic acid sequence alignment mode (simple, translated or mixed) Default value: n

-revcomp boolean

: Default value: N

-overlapw selection

: By default overlap weights are used when Nseq =<35 but you can set this to 'yes' or 'no' Default value: default (when Nseq =< 35)

-linkage list

: Clustering method to construct sequence tree (UPGMA, minimum linkage or maximum linkage) Default value: UPGMA

-maxfragl integer

: Default value: 40

-fragmat boolean

: Default value: N

-fragsim integer

: Default value: 4

-itscore boolean

: Default value: N

-threshold float

: Default value: 0.0

Output section

-mask boolean

: Default value: N

-dostars boolean

: Default value: N

-starnum integer

: Default value: 4

-outfile outfile

-outseq seqoutall

BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

AUTHOR

Debian Med Packaging Team <[email protected]>

: Wrote the script used to autogenerate this manual page.

COPYRIGHT

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.