einverted(1) Finds inverted repeats in nucleotide sequences


einverted -sequence seqall -gap integer -threshold integer -match integer -mismatch integer [-maxrepeat integer] -outfile outfile -outseq seqout
einverted -help



is a command line program from EMBOSS ("the European Molecular Biology Open Software Suite"). It is part of the "Nucleic:Repeats,Nucleic:2D structure" command group(s).


Input section

-sequence seqall

Required section

-gap integer

Default value: 12

-threshold integer

Default value: 50

-match integer

Default value: 3

-mismatch integer

Default value: -4

Additional section

-maxrepeat integer

Maximum separation between the start of repeat and the end of the inverted repeat. Default value: 2000

Output section

-outfile outfile

-outseq seqout

The sequence of the inverted repeat regions without gap characters.


Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).


Debian Med Packaging Team <[email protected]>

Wrote the script used to autogenerate this manual page.


This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.