man einverted (1): Finds inverted repeats in nucleotide sequences

SYNOPSIS

einverted -sequence seqall -gap integer -threshold integer -match integer -mismatch integer [-maxrepeat integer] -outfile outfile -outseq seqout
einverted -help

DESCRIPTION

einverted

is a command line program from EMBOSS ("the European Molecular Biology Open Software Suite"). It is part of the "Nucleic:Repeats,Nucleic:2D structure" command group(s).

OPTIONS

Input section

-sequence seqall

Required section

-gap integer

: Default value: 12

-threshold integer

: Default value: 50

-match integer

: Default value: 3

-mismatch integer

: Default value: -4

Additional section

-maxrepeat integer

: Maximum separation between the start of repeat and the end of the inverted repeat. Default value: 2000

Output section

-outfile outfile

-outseq seqout

: The sequence of the inverted repeat regions without gap characters.

BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

AUTHOR

Debian Med Packaging Team <[email protected]>

: Wrote the script used to autogenerate this manual page.

COPYRIGHT

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.