SYNOPSIS
-
fdnadist -sequence seqsetall -method list -gamma list -ncategories integer -rate array -categories properties [-weights properties] -gammacoefficient float -invarfrac float -ttratio float -freqsfrom toggle -basefreq array [-lower boolean] [-humanreadable boolean] -outfile outfile [-printdata boolean] [-progress boolean]
- fdnadist -help
DESCRIPTION
fdnadist
OPTIONS
Input section
-sequence seqsetall
- File containing one or more sequence alignments
-method list
- Default value: F84 distance model
-gamma list
- Default value: No distribution parameters used
-ncategories integer
- Default value: 1
-rate array
- Default value: 1.0
-categories properties
- File of substitution rate categories
-weights properties
Additional section
-gammacoefficient float
- Default value: 1
-invarfrac float
- Default value: 0.0
-ttratio float
- Default value: 2.0
-freqsfrom toggle
- Default value: Y
-basefreq array
- Default value: 0.25 0.25 0.25 0.25
-lower boolean
- Default value: N
-humanreadable boolean
- Default value: @($(method)==s?Y:N)
Output section
-outfile outfile
-printdata boolean
- Default value: N
-progress boolean
- Default value: Y
BUGS
Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).
AUTHOR
Debian Med Packaging Team <[email protected]>
- Wrote the script used to autogenerate this manual page.
COPYRIGHT
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.