fdnadist(1) Nucleic acid sequence Distance Matrix program


fdnadist -sequence seqsetall -method list -gamma list -ncategories integer -rate array -categories properties [-weights properties] -gammacoefficient float -invarfrac float -ttratio float -freqsfrom toggle -basefreq array [-lower boolean] [-humanreadable boolean] -outfile outfile [-printdata boolean] [-progress boolean]
fdnadist -help



is a command line program from EMBOSS ("the European Molecular Biology Open Software Suite"). It is part of the "Phylogeny:Molecular sequence" command group(s).


Input section

-sequence seqsetall

File containing one or more sequence alignments

-method list

Default value: F84 distance model

-gamma list

Default value: No distribution parameters used

-ncategories integer

Default value: 1

-rate array

Default value: 1.0

-categories properties

File of substitution rate categories

-weights properties

Additional section

-gammacoefficient float

Default value: 1

-invarfrac float

Default value: 0.0

-ttratio float

Default value: 2.0

-freqsfrom toggle

Default value: Y

-basefreq array

Default value: 0.25 0.25 0.25 0.25

-lower boolean

Default value: N

-humanreadable boolean

Default value: @($(method)==s?Y:N)

Output section

-outfile outfile

-printdata boolean

Default value: N

-progress boolean

Default value: Y


Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).


Debian Med Packaging Team <[email protected]>

Wrote the script used to autogenerate this manual page.


This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.