fmix(1) Mixed parsimony algorithm


fmix -infile discretestates -intreefile tree [-weights properties] [-ancfile properties] [-mixfile properties] -method list -njumble integer -seed integer [-outgrno integer] [-threshold float] -outfile outfile [-trout toggle] -outtreefile outfile [-printdata boolean] [-progress boolean] [-treeprint boolean] [-ancseq boolean] [-stepbox boolean]
fmix -help



is a command line program from EMBOSS ("the European Molecular Biology Open Software Suite"). It is part of the "Phylogeny:Discrete characters" command group(s).


Input section

-infile discretestates

File containing one or more data sets

-intreefile tree

-weights properties

-ancfile properties

-mixfile properties

Additional section

-method list

Default value: Wagner

-njumble integer

-seed integer

Default value: 1

-outgrno integer

-threshold float

Default value: $(infile.discretesize)

Output section

-outfile outfile

-trout toggle

Default value: Y

-outtreefile outfile

-printdata boolean

Default value: N

-progress boolean

Default value: Y

-treeprint boolean

Default value: Y

-ancseq boolean

Default value: N

-stepbox boolean

Default value: N


Bugs can be reported to the Debian Bug Tracking system (, or directly to the EMBOSS developers (


Debian Med Packaging Team <[email protected]>

Wrote the script used to autogenerate this manual page.


This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.