man fmix (1): Mixed parsimony algorithm

SYNOPSIS

fmix -infile discretestates -intreefile tree [-weights properties] [-ancfile properties] [-mixfile properties] -method list -njumble integer -seed integer [-outgrno integer] [-threshold float] -outfile outfile [-trout toggle] -outtreefile outfile [-printdata boolean] [-progress boolean] [-treeprint boolean] [-ancseq boolean] [-stepbox boolean]
fmix -help

DESCRIPTION

fmix

is a command line program from EMBOSS ("the European Molecular Biology Open Software Suite"). It is part of the "Phylogeny:Discrete characters" command group(s).

OPTIONS

Input section

-infile discretestates

: File containing one or more data sets

-intreefile tree

-weights properties

-ancfile properties

-mixfile properties

Additional section

-method list

: Default value: Wagner

-njumble integer

-seed integer

: Default value: 1

-outgrno integer

-threshold float

: Default value: $(infile.discretesize)

Output section

-outfile outfile

-trout toggle

: Default value: Y

-outtreefile outfile

-printdata boolean

: Default value: N

-progress boolean

: Default value: Y

-treeprint boolean

: Default value: Y

-ancseq boolean

: Default value: N

-stepbox boolean

: Default value: N

BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

AUTHOR

Debian Med Packaging Team <[email protected]>

: Wrote the script used to autogenerate this manual page.

COPYRIGHT

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.