fneighbor(1) Phylogenies from distance matrix by N-J or UPGMA method


fneighbor -datafile distances [-matrixtype list] [-treetype list] -outgrno integer [-jumble toggle] -seed integer [-replicates boolean] -outfile outfile [-trout toggle] -outtreefile outfile [-printdata boolean] [-progress boolean] [-treeprint boolean]
fneighbor -help



is a command line program from EMBOSS ("the European Molecular Biology Open Software Suite"). It is part of the "Phylogeny:Distance matrix" command group(s).


Input section

-datafile distances

Additional section

-matrixtype list

Default value: s

-treetype list

Default value: n

-outgrno integer

-jumble toggle

Default value: N

-seed integer

Default value: 1

-replicates boolean

Default value: N

Output section

-outfile outfile

-trout toggle

Default value: Y

-outtreefile outfile

-printdata boolean

Default value: N

-progress boolean

Default value: Y

-treeprint boolean

Default value: Y


Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).


Debian Med Packaging Team <[email protected]>

Wrote the script used to autogenerate this manual page.


This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.