SYNOPSIS
forge [options] <ann> <dna> [options]OPTIONS
-
-help
- -verbose
- -pseudocount <float>
- -verbose
- [1] (absolute number for all models)
-
-pseudoCoding <float> [0.0] (eg. 0.05)
- -pseudoIntron <float> [0.0]
- -pseudoInter <float>
- -pseudoIntron <float> [0.0]
- [0.0]
- -min-counts
- [0]
-
-lcmask [-fragmentN]
- -utr5-length <int>
- [50]
- -utr5-offset <int>
- [10]
- -utr3-length <int>
- [50]
- -utr3-offset <int>
- [10]
- -explicit <int>
- [250]
- -min-intron <int>
- [30]
- -boost <file>
-
(file of ID <int>)